cif_fix_values

--fix-temperature Corrects temperature values which have units specified or converts between degrees Celsius and kelvins. Changes 'room/ambiante temperature' to the appropriate numeric value. Changes other undefined values ('none', 'not given') to '?' symbol.

--fix-misspelled Corrects misspelled values in the CIF file. Provide a file for the check.

--fix-dois Removes URL or DOI: prefixes from values of DOI data items.

--fix-enums Corrects enumeration values in the CIF against CIF dictionaries. Provide dictionaries using option --dictionaries (or -d), otherwise script uses a built-in table derived from the CIF Core dictionary.

--treat-as-set Treats certain enumeration values as set data type in the CIF against CIF dictionaries (default). Provide dictionaries using --dictionaries (or -d) option, otherwise script uses a built-in table derived from the CIF Core dictionary.

--fix-density-meas Corrects value of data item '_exptl_crystal_density_meas'. Values which are perceived as 'not measured' are changed to '?'. The correct units are deleted. The new data item is created if there are information about temperature.

--fix-weighting-scheme Changes the value of the data item '_refine_ls_weighting_scheme' to the value 'calc' if it contains details which seems to have a formula, and creates new data item '_refine_ls_weighting_details' to store that information. If value is equal to number one, then it is changed to the enumeration value 'unit'.

--fix-atom-sites-solution Corrects the most frequent mistakes in the values of data items '_atom_sites_solution_primary', '_atom_sites_solution_secondary' and '_atom_sites_solution_hydrogens'.

--dictionaries A list of CIF dictionary files (according to DDL1) to be used in CIF file validation. List elements are separated either by ',' or by ' '. To include dictionaries with filenames containing these symbols, the --add-dictionary option is used.--add-dictionary Add additional CIF dictionary to the list.

--clear-dictionaries Remove all CIF dictionaries from the list.

--help Output a short usage message (this message) and exit.

--version Output version information and exit.

--use-perl-parser

--use-c-parser Specify parser to parse CIF files (default: C parser).

Pass the output to the next command: